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v0.8.0 results: tables, manifests, report tarballs and site data of the definitive run - #229
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… default not flipped yet) Co-Authored-By: Claude Sonnet 5.5 <[email protected]>
…ve run; site data and shards; v080 is the default release Run on commit a2933f7 with --preset v0.8: 19,415 Ascomycota, 3,275 Basidiomycota and 974 Mucoromycotina genomes. The landing page code label and the reproducibility row describe v0.8.0 against v0.7.0; v0.7.0 stays in RELEASES as the rollback target. Co-Authored-By: Claude Sonnet 5.5 <[email protected]>
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) * release prep: version 0.7.1 and a draft 0.7.1 changelog (not for merge until the release is cut) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Release prep: retarget to v0.8.0 (version strings, README, CHANGELOG entries for the routing, family and examples work) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * CHANGELOG: the cross-family rule is the genome-level decision (#219) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Release prep: changelog for the flank rule, label registry and frozen codes, MATss/MATpf/MATbz families and the profiles Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * update release date * Release prep v0.8.0: [0.8.0] changelog header, About and README wording (counts TBD until the run ends) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * CHANGELOG 0.8.0 known issues: flag the lines to confirm after the run Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Changelog: known issue for the S. pombe mat2 cassette relabelled as mat1 (#227) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Changelog: correct the O. degrootiae line, add the PR-over-MAT swap and the Ogataea routing loss Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Changelog: link the Ogataea routing known issue to #228 Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * v0.8.0 run counts: fill the changelog table and comparison, README validation rows and About wording Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Browser tool: run detect with --preset v0.8, the policy set of the v0.8.0 data Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * Changelog: cut the IndigoAg stand-in taxid sentence (no genome in the v0.8.0 run carries taxid 147538) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * misc: remove the MAT_logo images (not wanted in the repository) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * v0.8.0 results: tables, manifests, report tarballs and site data of the definitive run (#229) * build_site_data: v080 release entry (folders from the 2026-10-31 run; default not flipped yet) Co-Authored-By: Claude Sonnet 5.5 <[email protected]> * v0.8.0 results: tables, manifests and report tarballs of the definitive run; site data and shards; v080 is the default release Run on commit a2933f7 with --preset v0.8: 19,415 Ascomycota, 3,275 Basidiomycota and 974 Mucoromycotina genomes. The landing page code label and the reproducibility row describe v0.8.0 against v0.7.0; v0.7.0 stays in RELEASES as the rollback target. Co-Authored-By: Claude Sonnet 5.5 <[email protected]> --------- Co-authored-by: Claude Sonnet 5.5 <[email protected]> --------- Co-authored-by: Claude Sonnet 5.5 <[email protected]>
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Results of the v0.8.0 definitive run, stacked on #207 (base
prep-v0.7.1; merge #207 and tag from there, curator only).What is in it
results/2026-10-31_v080_{ascomycota,basidiomycota,mucoromycotina}:genomes.tsv,loci.tsv,by_*.tsv,MANIFEST.txt(commita2933f7,--preset v0.8, database digest70afa14e…, 184 records), the genome lists andreports_all.tar.zst(19,343 / 3,254 / 973 reports, the same counts as v0.7.0).scripts/build_site_data.py:v080entry inRELEASES,DEFAULT_RELEASE = "v080"; v0.7.0 stays as the rollback target. Test updated (49 pass in the two site and table test files).web/intro/data(summary, taxa, locus shards).web/intro/landing.html: code label fallback and the reproducibility row now describe v0.8.0 against v0.7.0 (22,448 of 23,570 identical in calls, confidence and gene models; 1,122 differ; every difference traced). Wording for the curator to check.Numbers
Against v0.7.0, by locus: 475 calls lost, 260 new, 645 confidence up, none down, no idiomorph flips, Mucoromycotina unchanged. The attribution is in the #207 changelog ("The definitive run"). Known issues: #227 (cross-family tie rule, S. pombe
mat2cassette and aPR-over-MATswap) and #228 (Ogataea routing loss), both held for v0.8.1.Checks
registry_version2026-10-30+5c01ddd5.Not done here: the 20-genome v0.7-vs-v0.8 timing benchmark (median wall time is about 3 to 4 times v0.7.0 across campaigns, cause not determined; calls are unaffected), and the Pages deploy, which only runs on the
v*tag.🤖 Generated with Claude Code